NRGTEN
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Index
Introduction
How to cite NRGTEN
Installation Guide
Typical Uses
Advanced uses
Detailed code documentation
Troubleshooting
NRGTEN
Index
Edit on GitHub
Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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M
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N
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O
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P
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R
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S
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U
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V
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W
_
__init__() (nrgten.anm.ANM method)
(nrgten.encom.ENCoM method)
(nrgten.enm.ENM method)
A
ANM (class in nrgten.anm)
atypes_dict (nrgten.enm.ENM attribute)
B
bfact_params (nrgten.encom.ENCoM attribute)
bfacts (nrgten.enm.ENM attribute)
bij (nrgten.encom.ENCoM attribute)
build_conf_ensemble() (nrgten.enm.ENM method)
build_from_pickle() (nrgten.anm.ANM method)
(nrgten.encom.ENCoM method)
(nrgten.enm.ENM method)
build_hessian() (nrgten.anm.ANM method)
(nrgten.encom.ENCoM method)
(nrgten.enm.ENM method)
build_hybrid_hessian() (nrgten.encom.ENCoM method)
C
compute_bfactors() (nrgten.enm.ENM method)
compute_vib_enthalpy() (nrgten.enm.ENM method)
compute_vib_entropy() (nrgten.enm.ENM method)
compute_vib_entropy_rigid_rotor() (nrgten.enm.ENM method)
cumulative_overlap() (in module nrgten.metrics)
cut (nrgten.anm.ANM attribute)
D
dirpath (nrgten.encom.ENCoM attribute)
(nrgten.enm.ENM attribute)
E
eigvals (nrgten.enm.ENM attribute)
eigvecs (nrgten.enm.ENM attribute)
eigvecs_mat (nrgten.enm.ENM attribute)
ENCoM (class in nrgten.encom)
ENM (class in nrgten.enm)
entropy (nrgten.enm.ENM attribute)
epsi (nrgten.encom.ENCoM attribute)
F
fit() (in module nrgten.metrics)
G
get_amplitudes_for_fit() (in module nrgten.metrics)
get_exp_bfacts() (nrgten.enm.ENM method)
get_filtered_3n_vector() (nrgten.enm.ENM method)
get_filtered_eigvecs_mat() (nrgten.enm.ENM method)
get_filtered_xyz() (nrgten.enm.ENM method)
get_n_masses() (nrgten.enm.ENM method)
get_overlaps() (in module nrgten.metrics)
get_transit_probs() (in module nrgten.metrics)
get_xyz() (nrgten.enm.ENM method)
H
h (nrgten.enm.ENM attribute)
I
ic (nrgten.encom.ENCoM attribute)
inter_mat (nrgten.encom.ENCoM attribute)
is_equal() (nrgten.enm.ENM method)
K
kphi (nrgten.encom.ENCoM attribute)
kr (nrgten.anm.ANM attribute)
(nrgten.encom.ENCoM attribute)
ktheta (nrgten.encom.ENCoM attribute)
M
massdefs (nrgten.enm.ENM attribute)
module
nrgten.anm
nrgten.encom
nrgten.enm
mol (nrgten.enm.ENM attribute)
mols (nrgten.enm.ENM attribute)
N
not_there (nrgten.enm.ENM attribute)
nrgten.anm
module
nrgten.encom
module
nrgten.enm
module
O
one_mass (nrgten.enm.ENM attribute)
P
pca_ensemble() (in module nrgten.metrics)
pd (nrgten.anm.ANM attribute)
(nrgten.encom.ENCoM attribute)
pdb_file (nrgten.enm.ENM attribute)
pickle() (nrgten.anm.ANM method)
(nrgten.encom.ENCoM method)
(nrgten.enm.ENM method)
pickle_version (nrgten.enm.ENM attribute)
R
rmsip() (in module nrgten.metrics)
S
set_bfactors() (nrgten.enm.ENM method)
set_occupancy() (nrgten.enm.ENM method)
solve() (nrgten.enm.ENM method)
U
use_stem (nrgten.encom.ENCoM attribute)
V
V1_H (nrgten.encom.ENCoM attribute)
V2_H (nrgten.encom.ENCoM attribute)
V3_H (nrgten.encom.ENCoM attribute)
V4_H (nrgten.encom.ENCoM attribute)
verbose (nrgten.enm.ENM attribute)
W
write_dynamical_signature() (nrgten.enm.ENM method)