Welcome to NRGTEN’s documentation!

Index

• Introduction
• How to cite NRGTEN
• Installation Guide
  • macOS and Linux users
  • Windows users
• Typical Uses
  • Dynamical signatures
  • Generating conformational ensembles
  • Vibrational entropy and the effect of mutations
  • Transition probabilities between conformational states
  • Running ENCoM on RNA
• Advanced uses
  • Adding custom residues/ligands to ENCoM
  • Metrics for benchmarking NMA methods
  • Implementing custom elastic networks
• Detailed code documentation
  • nrgten.enm
  • nrgten.encom
  • nrgten.anm
  • nrgten.metrics
• Troubleshooting
  • Python version

Indices and tables

• Index

• Module Index

• Search Page